esv4010216
- Organism: Homo sapiens
- Study:estd233 (Luo et al. 2017b)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:180,001
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 472 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 472 SVs from 58 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv4010216 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 107,990,242 | 108,170,242 |
| esv4010216 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000010.10 | Chr10 | 109,750,000 | 109,930,000 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| essv26066223 | copy number loss | hepG2 | Sequencing | Read depth and paired-end mapping | 1 | 1,026 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv26066223 | Remapped | Perfect | NC_000010.11:g.107 990242_108170242de l180000 | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 107,990,242 | 108,170,242 |
| essv26066223 | Submitted genomic | NC_000010.10:g.109 750000_109930000de l180000 | GRCh37 (hg19) | NC_000010.10 | Chr10 | 109,750,000 | 109,930,000 |