esv4010589
- Organism: Homo sapiens
- Study:estd233 (Luo et al. 2017b)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:4,230,484
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 12551 SVs from 112 studies. See in: genome view
Overlapping variant regions from other studies: 12496 SVs from 112 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv4010589 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000020.11 | Chr20 | 53,918,461 | 58,148,944 |
| esv4010589 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000020.10 | Chr20 | 52,535,000 | 56,724,000 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| essv26066596 | copy number gain | hepG2 | Sequencing | Read depth and paired-end mapping | 3 | 1,026 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv26066596 | Remapped | Good | NC_000020.11:g.539 18461_58148944dup | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 53,918,461 | 58,148,944 |
| essv26066596 | Submitted genomic | NC_000020.10:g.525 35000_56724000dup | GRCh37 (hg19) | NC_000020.10 | Chr20 | 52,535,000 | 56,724,000 |