esv4097
- Organism: Homo sapiens
- Study:estd3 (Wang et al. 2008)
- Variant Type:sequence alteration
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:3,209
- Publication(s):Wang et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 809 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 550 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 809 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 574 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv4097 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 1,526,370 | 1,529,578 |
| esv4097 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187529.1 | Chr2|NT_18 7529.1 | 208,741 | 211,949 |
| esv4097 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 1,530,142 | 1,533,350 |
| esv4097 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 1,509,149 | 1,512,357 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv26538 | sequence alteration | YH | Sequencing | Read depth and paired-end mapping | 2,682 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|
| essv26538 | Remapped | Perfect | GRCh38.p12 | Second Pass | NT_187529.1 | Chr2|NT_18 7529.1 | 208,741 | 211,949 |
| essv26538 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 1,526,370 | 1,529,578 |
| essv26538 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 1,530,142 | 1,533,350 |
| essv26538 | Submitted genomic | NCBI36 (hg18) | NC_000002.10 | Chr2 | 1,509,149 | 1,512,357 |