esv4110
- Organism: Homo sapiens
- Study:estd3 (Wang et al. 2008)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10,230
- Publication(s):Wang et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 463 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 463 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 265 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv4110 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 193,157,506 | 193,167,735 |
| esv4110 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 192,875,295 | 192,885,524 |
| esv4110 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 194,357,989 | 194,368,218 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv26551 | copy number loss | YH | Sequencing | Read depth and paired-end mapping | 2,682 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv26551 | Remapped | Perfect | NC_000003.12:g.(19 3157506_?)_(?_1931 67735)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 193,157,506 | 193,167,735 |
| essv26551 | Remapped | Perfect | NC_000003.11:g.(19 2875295_?)_(?_1928 85524)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 192,875,295 | 192,885,524 |
| essv26551 | Submitted genomic | NC_000003.10:g.(19 4357989_?)_(?_1943 68218)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 194,357,989 | 194,368,218 |