esv4676
- Organism: Homo sapiens
- Study:estd3 (Wang et al. 2008)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:21,804
- Publication(s):Wang et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 335 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 335 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 136 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv4676 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 1,893,990 | 1,915,793 |
| esv4676 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 1,915,220 | 1,937,023 |
| esv4676 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 1,871,796 | 1,893,599 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv27117 | copy number loss | YH | Sequencing | Read depth and paired-end mapping | 2,682 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv27117 | Remapped | Perfect | NC_000011.10:g.(18 93990_?)_(?_191579 3)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 1,893,990 | 1,915,793 |
| essv27117 | Remapped | Perfect | NC_000011.9:g.(191 5220_?)_(?_1937023 )del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 1,915,220 | 1,937,023 |
| essv27117 | Submitted genomic | NC_000011.8:g.(187 1796_?)_(?_1893599 )del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 1,871,796 | 1,893,599 |