esv5441
- Organism: Homo sapiens
- Study:estd19 (Ahn et al. 2009)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:46,353
- Publication(s):Ahn et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 391 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 391 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 117 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv5441 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 75,077,987 | 75,078,061 | 75,123,891 | 75,124,339 |
| esv5441 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 75,370,328 | 75,370,402 | 75,416,232 | 75,416,680 |
| esv5441 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 73,157,381 | 73,157,455 | 73,203,285 | 73,203,733 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| essv27882 | inversion | Sequencing | Read depth and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv27882 | Remapped | Perfect | NC_000015.10:g.(75 077987_75078061)_( 75123891_75124339) inv | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 75,077,987 | 75,078,061 | 75,123,891 | 75,124,339 |
| essv27882 | Remapped | Perfect | NC_000015.9:g.(753 70328_75370402)_(7 5416232_75416680)i nv | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 75,370,328 | 75,370,402 | 75,416,232 | 75,416,680 |
| essv27882 | Submitted genomic | NC_000015.8:g.(731 57381_73157455)_(7 3203285_73203733)i nv | NCBI36 (hg18) | NC_000015.8 | Chr15 | 73,157,381 | 73,157,455 | 73,203,285 | 73,203,733 |