esv5474
- Organism: Homo sapiens
- Study:estd19 (Ahn et al. 2009)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:58,298
- Publication(s):Ahn et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 359 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 359 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 139 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv5474 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 42,455,607 | 42,455,681 | 42,513,790 | 42,513,904 |
| esv5474 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 43,029,743 | 43,029,817 | 43,087,926 | 43,088,040 |
| esv5474 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000013.9 | Chr13 | 41,927,743 | 41,927,817 | 41,985,926 | 41,986,040 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| essv27915 | inversion | Sequencing | Read depth and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv27915 | Remapped | Perfect | NC_000013.11:g.(42 455607_42455681)_( 42513790_42513904) inv | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 42,455,607 | 42,455,681 | 42,513,790 | 42,513,904 |
| essv27915 | Remapped | Perfect | NC_000013.10:g.(43 029743_43029817)_( 43087926_43088040) inv | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 43,029,743 | 43,029,817 | 43,087,926 | 43,088,040 |
| essv27915 | Submitted genomic | NC_000013.9:g.(419 27743_41927817)_(4 1985926_41986040)i nv | NCBI36 (hg18) | NC_000013.9 | Chr13 | 41,927,743 | 41,927,817 | 41,985,926 | 41,986,040 |