esv5503
- Organism: Homo sapiens
- Study:estd19 (Ahn et al. 2009)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:31,473
- Publication(s):Ahn et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 233 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 233 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 84 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv5503 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 25,565,443 | 25,565,501 | 25,596,697 | 25,596,915 |
| esv5503 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000012.11 | Chr12 | 25,718,377 | 25,718,435 | 25,749,631 | 25,749,849 |
| esv5503 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000012.10 | Chr12 | 25,609,644 | 25,609,702 | 25,640,898 | 25,641,116 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| essv27944 | inversion | Sequencing | Read depth and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv27944 | Remapped | Perfect | NC_000012.12:g.(25 565443_25565501)_( 25596697_25596915) inv | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 25,565,443 | 25,565,501 | 25,596,697 | 25,596,915 |
| essv27944 | Remapped | Perfect | NC_000012.11:g.(25 718377_25718435)_( 25749631_25749849) inv | GRCh37.p13 | First Pass | NC_000012.11 | Chr12 | 25,718,377 | 25,718,435 | 25,749,631 | 25,749,849 |
| essv27944 | Submitted genomic | NC_000012.10:g.(25 609644_25609702)_( 25640898_25641116) inv | NCBI36 (hg18) | NC_000012.10 | Chr12 | 25,609,644 | 25,609,702 | 25,640,898 | 25,641,116 |