esv5543
- Organism: Homo sapiens
- Study:estd19 (Ahn et al. 2009)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10,531
- Publication(s):Ahn et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 87 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 87 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 11 SVs from 6 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv5543 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 43,375,564 | 43,376,054 | 43,385,995 | 43,386,094 |
| esv5543 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 43,417,056 | 43,417,546 | 43,427,487 | 43,427,586 |
| esv5543 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 43,392,060 | 43,392,550 | 43,402,491 | 43,402,590 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| essv27984 | inversion | Sequencing | Read depth and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv27984 | Remapped | Perfect | NC_000003.12:g.(43 375564_43376054)_( 43385995_43386094) inv | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 43,375,564 | 43,376,054 | 43,385,995 | 43,386,094 |
| essv27984 | Remapped | Perfect | NC_000003.11:g.(43 417056_43417546)_( 43427487_43427586) inv | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 43,417,056 | 43,417,546 | 43,427,487 | 43,427,586 |
| essv27984 | Submitted genomic | NC_000003.10:g.(43 392060_43392550)_( 43402491_43402590) inv | NCBI36 (hg18) | NC_000003.10 | Chr3 | 43,392,060 | 43,392,550 | 43,402,491 | 43,402,590 |