esv6540
- Organism: Homo sapiens
- Study:estd19 (Ahn et al. 2009)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:54,054
- Publication(s):Ahn et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 353 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 353 SVs from 59 studies. See in: genome view
Overlapping variant regions from other studies: 137 SVs from 18 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
esv6540 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 42,457,625 | 42,457,898 | 42,511,539 | 42,511,678 |
esv6540 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 43,031,761 | 43,032,034 | 43,085,675 | 43,085,814 |
esv6540 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000013.9 | Chr13 | 41,929,761 | 41,930,034 | 41,983,675 | 41,983,814 |
Variant Call Information
Variant Call ID | Type | Method | Analysis |
---|---|---|---|
essv28981 | inversion | Sequencing | Read depth and paired-end mapping |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
essv28981 | Remapped | Perfect | NC_000013.11:g.(42 457625_42457898)_( 42511539_42511678) inv | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 42,457,625 | 42,457,898 | 42,511,539 | 42,511,678 |
essv28981 | Remapped | Perfect | NC_000013.10:g.(43 031761_43032034)_( 43085675_43085814) inv | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 43,031,761 | 43,032,034 | 43,085,675 | 43,085,814 |
essv28981 | Submitted genomic | NC_000013.9:g.(419 29761_41930034)_(4 1983675_41983814)i nv | NCBI36 (hg18) | NC_000013.9 | Chr13 | 41,929,761 | 41,930,034 | 41,983,675 | 41,983,814 |