esv7167
- Organism: Homo sapiens
- Study:estd19 (Ahn et al. 2009)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:16,938
- Publication(s):Ahn et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 207 SVs from 45 studies. See in: genome view
Overlapping variant regions from other studies: 207 SVs from 45 studies. See in: genome view
Overlapping variant regions from other studies: 76 SVs from 13 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv7167 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 57,770,002 | 57,770,057 | 57,786,688 | 57,786,939 |
| esv7167 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000019.9 | Chr19 | 58,281,370 | 58,281,425 | 58,298,056 | 58,298,307 |
| esv7167 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000019.8 | Chr19 | 62,973,182 | 62,973,237 | 62,989,868 | 62,990,119 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| essv29608 | copy number loss | Sequencing | Read depth and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv29608 | Remapped | Perfect | NC_000019.10:g.(57 770002_57770057)_( 57786688_57786939) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 57,770,002 | 57,770,057 | 57,786,688 | 57,786,939 |
| essv29608 | Remapped | Perfect | NC_000019.9:g.(582 81370_58281425)_(5 8298056_58298307)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 58,281,370 | 58,281,425 | 58,298,056 | 58,298,307 |
| essv29608 | Submitted genomic | NC_000019.8:g.(629 73182_62973237)_(6 2989868_62990119)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 62,973,182 | 62,973,237 | 62,989,868 | 62,990,119 |