esv7794
- Organism: Homo sapiens
- Study:estd19 (Ahn et al. 2009)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:12,882
- Publication(s):Ahn et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 357 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 357 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 152 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| esv7794 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 110,262,103 | 110,262,207 | 110,274,853 | 110,274,984 |
| esv7794 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 113,024,383 | 113,024,487 | 113,037,133 | 113,037,264 |
| esv7794 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 112,064,204 | 112,064,308 | 112,076,954 | 112,077,085 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| essv30235 | copy number loss | Sequencing | Read depth and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| essv30235 | Remapped | Perfect | NC_000009.12:g.(11 0262103_110262207) _(110274853_110274 984)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,103 | 110,262,207 | 110,274,853 | 110,274,984 |
| essv30235 | Remapped | Perfect | NC_000009.11:g.(11 3024383_113024487) _(113037133_113037 264)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,383 | 113,024,487 | 113,037,133 | 113,037,264 |
| essv30235 | Submitted genomic | NC_000009.10:g.(11 2064204_112064308) _(112076954_112077 085)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,204 | 112,064,308 | 112,076,954 | 112,077,085 |