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dbVar

Database of genomic structural variation

esv9237

Organism: Homo sapiens

Study:estd19 (Ahn et al. 2009)
Variant Type:inversion
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:7,683

Publication(s):Ahn et al. 2009

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 481 SVs from 62 studies. See in: genome view

Remapped(Score: Good):91,587,566-91,595,248

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
esv9237	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	91,587,566	91,587,566	91,595,248	91,595,248
esv9237	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	91,775,608	91,775,692	91,782,904	91,783,272
esv9237	Remapped	Good	GRCh37.p13	PATCHES	Second Pass	NW_003871055.3	Chr1\|NW_00 3871055.3	1,596,211	1,596,211	1,603,933	1,603,933
esv9237	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000002.10	Chr2	91,139,335	91,139,419	91,146,631	91,146,999

Variant Call Information

Variant Call ID	Type	Method	Analysis
essv31678	inversion	Sequencing	Read depth and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
essv31678	Remapped	Good	NC_000002.12:g.(91 587566_91587566)_( 91595248_91595248) inv	GRCh38.p12	First Pass	NC_000002.12	Chr2	91,587,566	91,587,566	91,595,248	91,595,248
essv31678	Remapped	Good	NW_003871055.3:g.( 1596211_1596211)_( 1603933_1603933)in v	GRCh37.p13	Second Pass	NW_003871055.3	Chr1\|NW_00 3871055.3	1,596,211	1,596,211	1,603,933	1,603,933
essv31678	Remapped	Perfect	NC_000002.11:g.(91 775608_91775692)_( 91782904_91783272) inv	GRCh37.p13	First Pass	NC_000002.11	Chr2	91,775,608	91,775,692	91,782,904	91,783,272
essv31678	Submitted genomic		NC_000002.10:g.(91 139335_91139419)_( 91146631_91146999) inv	NCBI36 (hg18)		NC_000002.10	Chr2	91,139,335	91,139,419	91,146,631	91,146,999

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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