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dbVar

Database of genomic structural variation

esv9659

Organism: Homo sapiens

Study:estd19 (Ahn et al. 2009)
Variant Type:inversion
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:36,321

Publication(s):Ahn et al. 2009

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 848 SVs from 79 studies. See in: genome view

Remapped(Score: Perfect):55,780,179-55,816,499

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
esv9659	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	55,780,179	55,780,486	55,816,094	55,816,499
esv9659	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	55,814,091	55,814,398	55,850,006	55,850,411
esv9659	Remapped	Pass	GRCh37.p13	PATCHES	Second Pass	NW_003315945.1	Chr16\|NW_0 03315945.1	4,402	4,402	32,360	-
esv9659	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	54,371,592	54,371,899	54,407,507	54,407,912

Variant Call Information

Variant Call ID	Type	Method	Analysis
essv32100	inversion	Sequencing	Read depth and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
essv32100	Remapped	Perfect	NC_000016.10:g.(55 780179_55780486)_( 55816094_55816499) inv	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,780,179	55,780,486	55,816,094	55,816,499
essv32100	Remapped	Pass	NW_003315945.1:g.( 4402_4402)_(32360_ ?)inv	GRCh37.p13	Second Pass	NW_003315945.1	Chr16\|NW_0 03315945.1	4,402	4,402	32,360	-
essv32100	Remapped	Perfect	NC_000016.9:g.(558 14091_55814398)_(5 5850006_55850411)i nv	GRCh37.p13	First Pass	NC_000016.9	Chr16	55,814,091	55,814,398	55,850,006	55,850,411
essv32100	Submitted genomic		NC_000016.8:g.(543 71592_54371899)_(5 4407507_54407912)i nv	NCBI36 (hg18)		NC_000016.8	Chr16	54,371,592	54,371,899	54,407,507	54,407,912

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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