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dbVar

Database of genomic structural variation

nsv818116

Organism: Homo sapiens

Study:nstd64 (Wang et al. 2007)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:13,892

Publication(s):Wang et al. 2007

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 289 SVs from 59 studies. See in: genome view

Remapped(Score: Perfect):227,379,681-227,393,572

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv818116	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	227,379,681	227,393,572
nsv818116	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	228,244,397	228,258,288
nsv818116	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000002.9	Chr2	228,069,902	228,083,793

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1415746	copy number gain	NA12874	SNP array	Probe signal intensity	16
nssv1415747	copy number gain	NA12875	SNP array	Probe signal intensity	31
nssv1415748	copy number gain	NA12865	SNP array	Probe signal intensity	19
nssv1415882	copy number gain	NA11995	SNP array	Probe signal intensity	16
nssv1418539	copy number gain	NA12154	SNP array	Probe signal intensity	22
nssv1418540	copy number gain	NA10830	SNP array	Probe signal intensity	24

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1415746	Remapped	Perfect	NC_000002.12:g.(?_ 227379681)_(227393 572_?)dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	227,379,681	227,393,572
nssv1415747	Remapped	Perfect	NC_000002.12:g.(?_ 227379681)_(227393 572_?)dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	227,379,681	227,393,572
nssv1415748	Remapped	Perfect	NC_000002.12:g.(?_ 227379681)_(227393 572_?)dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	227,379,681	227,393,572
nssv1415882	Remapped	Perfect	NC_000002.12:g.(?_ 227379681)_(227393 572_?)dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	227,379,681	227,393,572
nssv1418539	Remapped	Perfect	NC_000002.12:g.(?_ 227379681)_(227393 572_?)dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	227,379,681	227,393,572
nssv1418540	Remapped	Perfect	NC_000002.12:g.(?_ 227379681)_(227393 572_?)dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	227,379,681	227,393,572
nssv1415746	Remapped	Perfect	NC_000002.11:g.(?_ 228244397)_(228258 288_?)dup	GRCh37.p13	First Pass	NC_000002.11	Chr2	228,244,397	228,258,288
nssv1415747	Remapped	Perfect	NC_000002.11:g.(?_ 228244397)_(228258 288_?)dup	GRCh37.p13	First Pass	NC_000002.11	Chr2	228,244,397	228,258,288
nssv1415748	Remapped	Perfect	NC_000002.11:g.(?_ 228244397)_(228258 288_?)dup	GRCh37.p13	First Pass	NC_000002.11	Chr2	228,244,397	228,258,288
nssv1415882	Remapped	Perfect	NC_000002.11:g.(?_ 228244397)_(228258 288_?)dup	GRCh37.p13	First Pass	NC_000002.11	Chr2	228,244,397	228,258,288
nssv1418539	Remapped	Perfect	NC_000002.11:g.(?_ 228244397)_(228258 288_?)dup	GRCh37.p13	First Pass	NC_000002.11	Chr2	228,244,397	228,258,288
nssv1418540	Remapped	Perfect	NC_000002.11:g.(?_ 228244397)_(228258 288_?)dup	GRCh37.p13	First Pass	NC_000002.11	Chr2	228,244,397	228,258,288
nssv1415746	Submitted genomic		NC_000002.9:g.(?_2 28069902)_(2280837 93_?)dup	NCBI35 (hg17)		NC_000002.9	Chr2	228,069,902	228,083,793
nssv1415747	Submitted genomic		NC_000002.9:g.(?_2 28069902)_(2280837 93_?)dup	NCBI35 (hg17)		NC_000002.9	Chr2	228,069,902	228,083,793
nssv1415748	Submitted genomic		NC_000002.9:g.(?_2 28069902)_(2280837 93_?)dup	NCBI35 (hg17)		NC_000002.9	Chr2	228,069,902	228,083,793
nssv1415882	Submitted genomic		NC_000002.9:g.(?_2 28069902)_(2280837 93_?)dup	NCBI35 (hg17)		NC_000002.9	Chr2	228,069,902	228,083,793
nssv1418539	Submitted genomic		NC_000002.9:g.(?_2 28069902)_(2280837 93_?)dup	NCBI35 (hg17)		NC_000002.9	Chr2	228,069,902	228,083,793
nssv1418540	Submitted genomic		NC_000002.9:g.(?_2 28069902)_(2280837 93_?)dup	NCBI35 (hg17)		NC_000002.9	Chr2	228,069,902	228,083,793

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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