nsv3400437

Organism: Homo sapiens

Study:nstd162 (Audano et al. 2019)
Variant Type:mobile element deletion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:12
Validation:Not tested
Clinical Assertions: No
Region Size:326

Description:Absence of a Alu insertion that is present in the reference
Publication(s):Audano et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 483 SVs from 47 studies. See in: genome view

Submitted genomic139,302,736-139,303,061

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3400437	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000023.11	ChrX	139,302,736	139,303,061
nsv3400437	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000023.10	ChrX	138,384,896	138,385,221

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14712705	alu deletion	SAMN04229548	Sequencing	de novo and local sequence assembly	23,009
nssv14715055	alu deletion	SAMN04251426	Sequencing	de novo and local sequence assembly	22,074
nssv14717066	alu deletion	SAMN09643900	Sequencing	de novo and local sequence assembly	26,631
nssv14718494	alu deletion	SAMN06885952	Sequencing	de novo and local sequence assembly	28,070
nssv14719667	alu deletion	SAMN05181962	Sequencing	de novo and local sequence assembly	23,563
nssv14720427	alu deletion	SAMN03838746	Sequencing	de novo and local sequence assembly	26,336
nssv14722134	alu deletion	SAMN09651199	Sequencing	de novo and local sequence assembly	27,381
nssv14724739	alu deletion	SAMN05603847	Sequencing	de novo and local sequence assembly	26,021
nssv14728523	alu deletion	SAMN02744161	Sequencing	de novo and local sequence assembly	20,941
nssv14729014	alu deletion	SAMN05603745	Sequencing	de novo and local sequence assembly	27,447
nssv14731287	alu deletion	SAMN09690649	Sequencing	de novo and local sequence assembly	21,495
nssv14732031	alu deletion	SAMN03255769	Sequencing	de novo and local sequence assembly	21,134

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14712705	Submitted genomic		NC_000023.11:g.139 302736_139303061de l	GRCh38 (hg38)		NC_000023.11	ChrX	139,302,736	139,303,061
nssv14715055	Submitted genomic		NC_000023.11:g.139 302736_139303061de l	GRCh38 (hg38)		NC_000023.11	ChrX	139,302,736	139,303,061
nssv14717066	Submitted genomic		NC_000023.11:g.139 302736_139303061de l	GRCh38 (hg38)		NC_000023.11	ChrX	139,302,736	139,303,061
nssv14718494	Submitted genomic		NC_000023.11:g.139 302736_139303061de l	GRCh38 (hg38)		NC_000023.11	ChrX	139,302,736	139,303,061
nssv14719667	Submitted genomic		NC_000023.11:g.139 302736_139303061de l	GRCh38 (hg38)		NC_000023.11	ChrX	139,302,736	139,303,061
nssv14720427	Submitted genomic		NC_000023.11:g.139 302736_139303061de l	GRCh38 (hg38)		NC_000023.11	ChrX	139,302,736	139,303,061
nssv14722134	Submitted genomic		NC_000023.11:g.139 302736_139303061de l	GRCh38 (hg38)		NC_000023.11	ChrX	139,302,736	139,303,061
nssv14724739	Submitted genomic		NC_000023.11:g.139 302736_139303061de l	GRCh38 (hg38)		NC_000023.11	ChrX	139,302,736	139,303,061
nssv14728523	Submitted genomic		NC_000023.11:g.139 302736_139303061de l	GRCh38 (hg38)		NC_000023.11	ChrX	139,302,736	139,303,061
nssv14729014	Submitted genomic		NC_000023.11:g.139 302736_139303061de l	GRCh38 (hg38)		NC_000023.11	ChrX	139,302,736	139,303,061
nssv14731287	Submitted genomic		NC_000023.11:g.139 302736_139303061de l	GRCh38 (hg38)		NC_000023.11	ChrX	139,302,736	139,303,061
nssv14732031	Submitted genomic		NC_000023.11:g.139 302736_139303061de l	GRCh38 (hg38)		NC_000023.11	ChrX	139,302,736	139,303,061
nssv14712705	Remapped	Perfect	NC_000023.10:g.138 384896_138385221de lNC_000023.10:g.13 8384896_138385221d el	GRCh37.p13	First Pass	NC_000023.10	ChrX	138,384,896	138,385,221
nssv14715055	Remapped	Perfect	NC_000023.10:g.138 384896_138385221de lNC_000023.10:g.13 8384896_138385221d el	GRCh37.p13	First Pass	NC_000023.10	ChrX	138,384,896	138,385,221
nssv14717066	Remapped	Perfect	NC_000023.10:g.138 384896_138385221de lNC_000023.10:g.13 8384896_138385221d el	GRCh37.p13	First Pass	NC_000023.10	ChrX	138,384,896	138,385,221
nssv14718494	Remapped	Perfect	NC_000023.10:g.138 384896_138385221de lNC_000023.10:g.13 8384896_138385221d el	GRCh37.p13	First Pass	NC_000023.10	ChrX	138,384,896	138,385,221
nssv14719667	Remapped	Perfect	NC_000023.10:g.138 384896_138385221de lNC_000023.10:g.13 8384896_138385221d el	GRCh37.p13	First Pass	NC_000023.10	ChrX	138,384,896	138,385,221
nssv14720427	Remapped	Perfect	NC_000023.10:g.138 384896_138385221de lNC_000023.10:g.13 8384896_138385221d el	GRCh37.p13	First Pass	NC_000023.10	ChrX	138,384,896	138,385,221
nssv14722134	Remapped	Perfect	NC_000023.10:g.138 384896_138385221de lNC_000023.10:g.13 8384896_138385221d el	GRCh37.p13	First Pass	NC_000023.10	ChrX	138,384,896	138,385,221
nssv14724739	Remapped	Perfect	NC_000023.10:g.138 384896_138385221de lNC_000023.10:g.13 8384896_138385221d el	GRCh37.p13	First Pass	NC_000023.10	ChrX	138,384,896	138,385,221
nssv14728523	Remapped	Perfect	NC_000023.10:g.138 384896_138385221de lNC_000023.10:g.13 8384896_138385221d el	GRCh37.p13	First Pass	NC_000023.10	ChrX	138,384,896	138,385,221
nssv14729014	Remapped	Perfect	NC_000023.10:g.138 384896_138385221de lNC_000023.10:g.13 8384896_138385221d el	GRCh37.p13	First Pass	NC_000023.10	ChrX	138,384,896	138,385,221
nssv14731287	Remapped	Perfect	NC_000023.10:g.138 384896_138385221de lNC_000023.10:g.13 8384896_138385221d el	GRCh37.p13	First Pass	NC_000023.10	ChrX	138,384,896	138,385,221
nssv14732031	Remapped	Perfect	NC_000023.10:g.138 384896_138385221de lNC_000023.10:g.13 8384896_138385221d el	GRCh37.p13	First Pass	NC_000023.10	ChrX	138,384,896	138,385,221

Showing 24 of 36

dbVar

Database of genomic structural variation

nsv3400437

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Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant