nsv5323599
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:mobile element deletion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,610
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 294 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 294 SVs from 69 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5323599 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000007.14 | Chr7 | 100,740,292 (-3, +2) | 100,742,901 (-4, +1) | ||
| nsv5323599 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 100,337,915 (-3, +2) | 100,340,524 (-4, +1) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16776425 | sva deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16776425 | Submitted genomic | NC_000007.14:g.(10 0740289_100740294) _(100742897_100742 902)del | GRCh38.p13 | NC_000007.14 | Chr7 | 100,740,292 (-3, +2) | 100,742,901 (-4, +1) | ||
| nssv16776425 | Remapped | Perfect | NC_000007.13:g.(10 0337912_100337917) _(100340520_100340 525)del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 100,337,915 (-3, +2) | 100,340,524 (-4, +1) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16776425 | 0.015 |