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dbVar

Database of genomic structural variation

nsv979757

Organism: Pongo pygmaeus

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Region Size:28,766

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 185 SVs from 38 studies. See in: genome view

Remapped(Score: Perfect):38,403,105-38,431,870

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv979757	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000022.11	Chr22	38,403,105	38,431,870
nsv979757	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000022.10	Chr22	38,799,110	38,827,875
nsv979757	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000022.9	Chr22	37,129,056	37,157,821

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv2766832	duplication	Pongo_pygmaeus-KB5406_Doris	Sequencing	Read depth	3	9,403

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv2766832	Remapped	Perfect	NC_000022.11:g.(?_ 38403105)_(3843187 0_?)dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	38,403,105	38,431,870
nssv2766832	Remapped	Perfect	NC_000022.10:g.(?_ 38799110)_(3882787 5_?)dup	GRCh37.p13	First Pass	NC_000022.10	Chr22	38,799,110	38,827,875
nssv2766832	Submitted genomic		NC_000022.9:g.(?_3 7129056)_(37157821 _?)dup	NCBI36 (hg18)		NC_000022.9	Chr22	37,129,056	37,157,821

No validation data were submitted for this variant

No genotype data were submitted for this variant

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