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dbVar

Database of genomic structural variation

nsv1140400

Organism: Homo sapiens

Study:nstd106 (Alsmadi et al. 2014)
Variant Type:inversion
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:3,472

Publication(s):Alsmadi et al. 2014

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 500 SVs from 29 studies. See in: genome view

Remapped(Score: Perfect):145,321,775-145,325,246

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv1140400	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	145,321,775	145,325,246
nsv1140400	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000023.10	ChrX	144,403,293	144,406,764

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3960943	inversion	KWS1	Sequencing	Read depth and paired-end mapping	22,470
nssv3993558	inversion	KWS2	Sequencing	Read depth and paired-end mapping	21,718

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv3960943	Remapped	Perfect	NC_000023.11:g.(14 5321775_?)_(?_1453 25246)inv	GRCh38.p12	First Pass	NC_000023.11	ChrX	145,321,775	145,325,246
nssv3993558	Remapped	Perfect	NC_000023.11:g.(14 5321775_?)_(?_1453 25246)inv	GRCh38.p12	First Pass	NC_000023.11	ChrX	145,321,775	145,325,246
nssv3960943	Submitted genomic		NC_000023.10:g.(14 4403293_?)_(?_1444 06764)inv	GRCh37 (hg19)		NC_000023.10	ChrX	144,403,293	144,406,764
nssv3993558	Submitted genomic		NC_000023.10:g.(14 4403293_?)_(?_1444 06764)inv	GRCh37 (hg19)		NC_000023.10	ChrX	144,403,293	144,406,764

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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