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dbVar

Database of genomic structural variation

nsv508876

Organism: Homo sapiens

Study:nstd49 (Teague et al. 2010)
Variant Type:insertion
Method Type:Optical mapping
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:64,386

Publication(s):Teague et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 283 SVs from 56 studies. See in: genome view

Remapped(Score: Perfect):158,275,730-158,340,115

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv508876	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	158,275,730	158,340,115
nsv508876	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	159,132,242	159,196,627
nsv508876	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000002.9	Chr2	158,957,750	159,022,135

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv619294	insertion	GM10860	Optical mapping	Optical mapping	1,998
nssv623878	insertion	GM18994	Optical mapping	Optical mapping	1,936

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv619294	Remapped	Perfect	NC_000002.12:g.(15 8275730_?)_(?_1583 40115)ins4184	GRCh38.p12	First Pass	NC_000002.12	Chr2	158,275,730	158,340,115
nssv623878	Remapped	Perfect	NC_000002.12:g.(15 8275730_?)_(?_1583 40115)ins5515	GRCh38.p12	First Pass	NC_000002.12	Chr2	158,275,730	158,340,115
nssv619294	Remapped	Perfect	NC_000002.11:g.(15 9132242_?)_(?_1591 96627)ins4184	GRCh37.p13	First Pass	NC_000002.11	Chr2	159,132,242	159,196,627
nssv623878	Remapped	Perfect	NC_000002.11:g.(15 9132242_?)_(?_1591 96627)ins5515	GRCh37.p13	First Pass	NC_000002.11	Chr2	159,132,242	159,196,627
nssv619294	Submitted genomic		NC_000002.9:g.(158 957750_?)_(?_15902 2135)ins4184	NCBI35 (hg17)		NC_000002.9	Chr2	158,957,750	159,022,135
nssv623878	Submitted genomic		NC_000002.9:g.(158 957750_?)_(?_15902 2135)ins5515	NCBI35 (hg17)		NC_000002.9	Chr2	158,957,750	159,022,135

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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