nsv481969
- Organism: Homo sapiens
- Study:nstd36 (Mitsui et al. 2010)
- Variant Type:copy number variation
- Method Type:Oligo aCGH, Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:58,918
- Publication(s):Mitsui et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 582 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 583 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 212 SVs from 11 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv481969 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 33,040,465 | 33,099,382 |
| nsv481969 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 33,058,582 | 33,117,499 |
| nsv481969 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000023.9 | ChrX | 32,968,503 | 33,027,420 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation |
|---|---|---|---|---|---|---|
| nssv650315 | deletion | Oligo aCGH, Sequencing | Probe signal intensity, Sequence alignment | Neoplasms | Likely benign | Submitter |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv650315 | Remapped | Perfect | NC_000023.11:g.330 40465_33099382del | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 33,040,465 | 33,099,382 |
| nssv650315 | Remapped | Perfect | NC_000023.10:g.330 58582_33117499del | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 33,058,582 | 33,117,499 |
| nssv650315 | Submitted genomic | NC_000023.9:g.3296 8503_33027420del | NCBI36 (hg18) | NC_000023.9 | ChrX | 32,968,503 | 33,027,420 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Subject Phenotype | Clinical Interpretation | Source of Interpretation |
|---|---|---|---|---|---|
| nssv650315 | NCBI36: NC_000023.9:g.32968503_33027420del | deletion | Neoplasms | Likely benign | Submitter |