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dbVar

Database of genomic structural variation

nsv10093

Organism: Homo sapiens

Study:nstd4 (Perry et al. 2008)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:59,177

Publication(s):Perry et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 207 SVs from 27 studies. See in: genome view

Remapped(Score: Perfect):95,858,411-95,917,587

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv10093	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	95,858,411	95,917,587
nsv10093	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	96,524,159	96,583,335
nsv10093	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000002.9	Chr2	95,946,033	96,005,209

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv25461	copy number loss	NA18980	Oligo aCGH	Probe signal intensity	561
nssv27156	copy number loss	NA18572	Oligo aCGH	Probe signal intensity	483

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv25461	Remapped	Perfect	NC_000002.12:g.(95 858411_95867484)_( 95889442_95913682) del	GRCh38.p12	First Pass	NC_000002.12	Chr2	95,858,411	95,867,484	95,889,442	95,913,682
nssv27156	Remapped	Perfect	NC_000002.12:g.(95 867484_95867529)_( 95913689_95917587) del	GRCh38.p12	First Pass	NC_000002.12	Chr2	95,867,484	95,867,529	95,913,689	95,917,587
nssv25461	Remapped	Perfect	NC_000002.11:g.(96 524159_96533232)_( 96555190_96579430) del	GRCh37.p13	First Pass	NC_000002.11	Chr2	96,524,159	96,533,232	96,555,190	96,579,430
nssv27156	Remapped	Perfect	NC_000002.11:g.(96 533232_96533277)_( 96579437_96583335) del	GRCh37.p13	First Pass	NC_000002.11	Chr2	96,533,232	96,533,277	96,579,437	96,583,335
nssv25461	Submitted genomic		NC_000002.9:g.(959 46033_95955106)_(9 5977064_96001304)d el	NCBI35 (hg17)		NC_000002.9	Chr2	95,946,033	95,955,106	95,977,064	96,001,304
nssv27156	Submitted genomic		NC_000002.9:g.(959 55106_95955151)_(9 6001311_96005209)d el	NCBI35 (hg17)		NC_000002.9	Chr2	95,955,106	95,955,151	96,001,311	96,005,209

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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