Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv10580

Organism: Homo sapiens

Study:nstd4 (Perry et al. 2008)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI35 (hg17)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:62,202

Publication(s):Perry et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 137 SVs from 28 studies. See in: genome view

Remapped(Score: Perfect):142,873,005-142,935,206

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv10580	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	142,873,005	142,935,206
nsv10580	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	143,794,158	143,856,359
nsv10580	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000004.9	Chr4	144,151,763	144,213,964

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv13671	copy number loss	NA18860	Oligo aCGH	Probe signal intensity	768

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv13671	Remapped	Perfect	NC_000004.12:g.(14 2873005_142873083) _(142874028_142935 206)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	142,873,005	142,873,083	142,874,028	142,935,206
nssv13671	Remapped	Perfect	NC_000004.11:g.(14 3794158_143794236) _(143795181_143856 359)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	143,794,158	143,794,236	143,795,181	143,856,359
nssv13671	Submitted genomic		NC_000004.9:g.(144 151763_144151841)_ (144152786_1442139 64)del	NCBI35 (hg17)		NC_000004.9	Chr4	144,151,763	144,151,841	144,152,786	144,213,964

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI