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dbVar

Database of genomic structural variation

nsv10669

Organism: Homo sapiens

Study:nstd4 (Perry et al. 2008)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:143,586

Publication(s):Perry et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 363 SVs from 32 studies. See in: genome view

Remapped(Score: Perfect):13,195,328-13,338,913

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv10669	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	13,195,328	13,338,913
nsv10669	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	13,195,440	13,339,025
nsv10669	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000005.8	Chr5	13,248,440	13,392,025

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv12636	copy number loss	NA10863	Oligo aCGH	Probe signal intensity	530
nssv15233	copy number loss	NA18972	Oligo aCGH	Probe signal intensity	693

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv12636	Remapped	Perfect	NC_000005.10:g.(13 195328_13203982)_( 13337607_13338913) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	13,195,328	13,203,982	13,337,607	13,338,913
nssv15233	Remapped	Perfect	NC_000005.10:g.(13 212985_13213508)_( 13216744_13220473) del	GRCh38.p12	First Pass	NC_000005.10	Chr5	13,212,985	13,213,508	13,216,744	13,220,473
nssv12636	Remapped	Perfect	NC_000005.9:g.(131 95440_13204094)_(1 3337719_13339025)d el	GRCh37.p13	First Pass	NC_000005.9	Chr5	13,195,440	13,204,094	13,337,719	13,339,025
nssv15233	Remapped	Perfect	NC_000005.9:g.(132 13097_13213620)_(1 3216856_13220585)d el	GRCh37.p13	First Pass	NC_000005.9	Chr5	13,213,097	13,213,620	13,216,856	13,220,585
nssv12636	Submitted genomic		NC_000005.8:g.(132 48440_13257094)_(1 3390719_13392025)d el	NCBI35 (hg17)		NC_000005.8	Chr5	13,248,440	13,257,094	13,390,719	13,392,025
nssv15233	Submitted genomic		NC_000005.8:g.(132 66097_13266620)_(1 3269856_13273585)d el	NCBI35 (hg17)		NC_000005.8	Chr5	13,266,097	13,266,620	13,269,856	13,273,585

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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