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dbVar

Database of genomic structural variation

nsv1125907

Organism: Homo sapiens

Study:nstd106 (Alsmadi et al. 2014)
Variant Type:tandem duplication
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:30,747

Publication(s):Alsmadi et al. 2014

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 379 SVs from 61 studies. See in: genome view

Remapped(Score: Perfect):20,681,032-20,711,778

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv1125907	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	20,681,032	20,711,778
nsv1125907	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000007.13	Chr7	20,720,655	20,751,401

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3988376	tandem duplication	KWS1	Sequencing	Read depth and paired-end mapping	22,470
nssv3993985	tandem duplication	KWS2	Sequencing	Read depth and paired-end mapping	21,718

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv3988376	Remapped	Perfect	NC_000007.14:g.(20 681032_?)_(?_20711 778)dup	GRCh38.p12	First Pass	NC_000007.14	Chr7	20,681,032	20,711,778
nssv3993985	Remapped	Perfect	NC_000007.14:g.(20 681032_?)_(?_20711 778)dup	GRCh38.p12	First Pass	NC_000007.14	Chr7	20,681,032	20,711,778
nssv3988376	Submitted genomic		NC_000007.13:g.(20 720655_?)_(?_20751 401)dup	GRCh37 (hg19)		NC_000007.13	Chr7	20,720,655	20,751,401
nssv3993985	Submitted genomic		NC_000007.13:g.(20 720655_?)_(?_20751 401)dup	GRCh37 (hg19)		NC_000007.13	Chr7	20,720,655	20,751,401

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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