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dbVar

Database of genomic structural variation

nsv1142107

Organism: Homo sapiens

Study:nstd106 (Alsmadi et al. 2014)
Variant Type:tandem duplication
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:22,639

Publication(s):Alsmadi et al. 2014

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 208 SVs from 56 studies. See in: genome view

Remapped(Score: Perfect):33,625,953-33,648,591

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv1142107	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	33,625,953	33,648,591
nsv1142107	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	33,647,499	33,670,137

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3962251	tandem duplication	KWS1	Sequencing	Read depth and paired-end mapping	22,470
nssv3983699	tandem duplication	KWS2	Sequencing	Read depth and paired-end mapping	21,718

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv3962251	Remapped	Perfect	NC_000011.10:g.(33 625953_?)_(?_33648 591)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	33,625,953	33,648,591
nssv3983699	Remapped	Perfect	NC_000011.10:g.(33 625953_?)_(?_33648 591)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	33,625,953	33,648,591
nssv3962251	Submitted genomic		NC_000011.9:g.(336 47499_?)_(?_336701 37)dup	GRCh37 (hg19)		NC_000011.9	Chr11	33,647,499	33,670,137
nssv3983699	Submitted genomic		NC_000011.9:g.(336 47499_?)_(?_336701 37)dup	GRCh37 (hg19)		NC_000011.9	Chr11	33,647,499	33,670,137

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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