nsv1149515
- Organism: Homo sapiens
- Study:nstd107 (John et al. 2014)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:25,014
- Publication(s):John et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 617 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 158 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 617 SVs from 57 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1149515 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 1,757,455 | 1,782,468 |
| nsv1149515 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_019805503.1 | Chr18|NW_0 19805503.1 | 13,274 | 38,287 |
| nsv1149515 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 1,757,456 | 1,782,469 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv4000818 | inversion | KWB1 | Sequencing | Read depth and paired-end mapping | 8,440 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv4000818 | Remapped | Perfect | NW_019805503.1:g.( 13274_?)_(?_38287) inv | GRCh38.p12 | Second Pass | NW_019805503.1 | Chr18|NW_0 19805503.1 | 13,274 | 38,287 |
| nssv4000818 | Remapped | Perfect | NC_000018.10:g.(17 57455_?)_(?_178246 8)inv | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 1,757,455 | 1,782,468 |
| nssv4000818 | Submitted genomic | NC_000018.9:g.(175 7456_?)_(?_1782469 )inv | GRCh37 (hg19) | NC_000018.9 | Chr18 | 1,757,456 | 1,782,469 |