nsv1149767
- Organism: Homo sapiens
- Study:nstd107 (John et al. 2014)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:262
- Publication(s):John et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 946 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 567 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 946 SVs from 66 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1149767 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 16,168,173 | 16,168,262 |
| nsv1149767 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187607.1 | Chr16|NT_1 87607.1 | 1,826,107 | 1,826,368 |
| nsv1149767 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000016.9 | Chr16 | 16,262,030 | 16,262,119 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv3998557 | insertion | KWB1 | Sequencing | Read depth and paired-end mapping | 8,440 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3998557 | Remapped | Pass | NT_187607.1:g.(182 6107_?)_(?_1826368 )ins? | GRCh38.p12 | Second Pass | NT_187607.1 | Chr16|NT_1 87607.1 | 1,826,107 | 1,826,368 |
| nssv3998557 | Remapped | Perfect | NC_000016.10:g.(16 168173_?)_(?_16168 262)ins? | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 16,168,173 | 16,168,262 |
| nssv3998557 | Submitted genomic | NC_000016.9:g.(162 62030_?)_(?_162621 19)ins(0_?) | GRCh37 (hg19) | NC_000016.9 | Chr16 | 16,262,030 | 16,262,119 |