nsv1153346
- Organism: Homo sapiens
- Study:nstd107 (John et al. 2014)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):John et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 262 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 258 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 80 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 80 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 261 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 257 SVs from 50 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv1153346 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 133,254,974 | 133,254,974 | not reported |
| nsv1153346 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 133,255,261 | 133,255,261 | not reported |
| nsv1153346 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_009646201.1 | Chr9|NW_00 9646201.1 | 81,067 | 81,067 | not reported |
| nsv1153346 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_009646201.1 | Chr9|NW_00 9646201.1 | 81,354 | 81,354 | not reported |
| nsv1153346 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 136,130,361 | 136,130,361 | not reported | ||
| nsv1153346 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 136,130,648 | 136,130,648 | not reported |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv4001264 | intrachromosomal translocation | KWB1 | Sequencing | Read depth and paired-end mapping | 8,440 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv4001264 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_009646201.1 | Chr9|NW_00 9646201.1 | 81,067 | 81,067 | not reported |
| nssv4001264 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_009646201.1 | Chr9|NW_00 9646201.1 | 81,354 | 81,354 | not reported |
| nssv4001264 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 133,254,974 | 133,254,974 | not reported |
| nssv4001264 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 133,255,261 | 133,255,261 | not reported |
| nssv4001264 | Submitted genomic | GRCh37 (hg19) | NC_000009.11 | Chr9 | 136,130,361 | 136,130,361 | not reported | ||
| nssv4001264 | Submitted genomic | GRCh37 (hg19) | NC_000009.11 | Chr9 | 136,130,648 | 136,130,648 | not reported |