nsv1153446
- Organism: Homo sapiens
- Study:nstd107 (John et al. 2014)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):John et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2189 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 2200 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 1750 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 1960 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 1978 SVs from 76 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv1153446 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 106,325,421 | 106,325,421 | not reported |
| nsv1153446 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 106,350,530 | 106,350,530 | not reported |
| nsv1153446 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 793,190 | 793,190 | not reported |
| nsv1153446 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000014.8 | Chr14 | 106,781,678 | 106,781,678 | not reported | ||
| nsv1153446 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000014.8 | Chr14 | 106,806,464 | 106,806,464 | not reported |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv4001365 | intrachromosomal translocation | KWB1 | Sequencing | Read depth and paired-end mapping | 8,440 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv4001365 | Remapped | Perfect | GRCh38.p12 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 793,190 | 793,190 | not reported |
| nssv4001365 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,325,421 | 106,325,421 | not reported |
| nssv4001365 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,350,530 | 106,350,530 | not reported |
| nssv4001365 | Submitted genomic | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,781,678 | 106,781,678 | not reported | ||
| nssv4001365 | Submitted genomic | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,806,464 | 106,806,464 | not reported |