nsv1153560
- Organism: Homo sapiens
- Study:nstd107 (John et al. 2014)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):John et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 440 SVs from 47 studies. See in: genome view
Overlapping variant regions from other studies: 441 SVs from 48 studies. See in: genome view
Overlapping variant regions from other studies: 440 SVs from 47 studies. See in: genome view
Overlapping variant regions from other studies: 441 SVs from 48 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv1153560 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 104,997 | 104,997 | not reported |
| nsv1153560 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 105,104 | 105,104 | not reported |
| nsv1153560 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 105,112 | 105,112 | not reported | ||
| nsv1153560 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 105,219 | 105,219 | not reported |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv4002217 | intrachromosomal translocation | KWB1 | Sequencing | Read depth and paired-end mapping | 8,440 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv4002217 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 104,997 | 104,997 | not reported |
| nssv4002217 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 105,104 | 105,104 | not reported |
| nssv4002217 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 105,112 | 105,112 | not reported | ||
| nssv4002217 | Submitted genomic | GRCh37 (hg19) | NC_000005.9 | Chr5 | 105,219 | 105,219 | not reported |