nsv1154020
- Organism: Homo sapiens
- Study:nstd107 (John et al. 2014)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):John et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 124 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 99 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 124 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 99 SVs from 25 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv1154020 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 52,835,585 | 52,835,585 | - |
nsv1154020 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 118,180,486 | 118,180,486 | - |
nsv1154020 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 53,301,257 | 53,301,257 | - | ||
nsv1154020 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000012.11 | Chr12 | 118,618,291 | 118,618,291 | - |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv4003299 | interchromosomal translocation | KWB1 | Sequencing | Read depth and paired-end mapping | 8,440 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|
nssv4003299 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 52,835,585 | 52,835,585 | - |
nssv4003299 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 118,180,486 | 118,180,486 | - |
nssv4003299 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 53,301,257 | 53,301,257 | - | ||
nssv4003299 | Submitted genomic | GRCh37 (hg19) | NC_000012.11 | Chr12 | 118,618,291 | 118,618,291 | - |