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dbVar

Database of genomic structural variation

nsv1154033

Organism: Homo sapiens

Study:nstd107 (John et al. 2014)
Variant Type:translocation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):John et al. 2014

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 88 SVs from 25 studies. See in: genome view

Remapped(Score: Perfect):55,106,208-55,106,208

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nsv1154033	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	55,106,208	55,106,208	-
nsv1154033	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	81,067,899	81,067,899	-
nsv1154033	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	54,402,036	54,402,036	-
nsv1154033	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	81,360,240	81,360,240	-

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv4003311	interchromosomal translocation	KWB1	Sequencing	Read depth and paired-end mapping	8,440

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nssv4003311	Remapped	Perfect	GRCh38.p12	First Pass	NC_000005.10	Chr5	55,106,208	55,106,208	-
nssv4003311	Remapped	Perfect	GRCh38.p12	First Pass	NC_000015.10	Chr15	81,067,899	81,067,899	-
nssv4003311	Submitted genomic		GRCh37 (hg19)		NC_000005.9	Chr5	54,402,036	54,402,036	-
nssv4003311	Submitted genomic		GRCh37 (hg19)		NC_000015.9	Chr15	81,360,240	81,360,240	-

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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