nsv1154048
- Organism: Homo sapiens
- Study:nstd107 (John et al. 2014)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):John et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 219 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 173 SVs from 22 studies. See in: genome view
Overlapping variant regions from other studies: 222 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 173 SVs from 22 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv1154048 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 174,249,978 | 174,249,978 | - |
nsv1154048 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 122,585,624 | 122,585,624 | - |
nsv1154048 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 174,219,116 | 174,219,116 | - | ||
nsv1154048 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 122,456,332 | 122,456,332 | - |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv4003325 | interchromosomal translocation | KWB1 | Sequencing | Read depth and paired-end mapping | 8,440 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|
nssv4003325 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 174,249,978 | 174,249,978 | - |
nssv4003325 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 122,585,624 | 122,585,624 | - |
nssv4003325 | Submitted genomic | GRCh37 (hg19) | NC_000001.10 | Chr1 | 174,219,116 | 174,219,116 | - | ||
nssv4003325 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 122,456,332 | 122,456,332 | - |