nsv1154101
- Organism: Homo sapiens
- Study:nstd107 (John et al. 2014)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):John et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 97 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 340 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 97 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 340 SVs from 33 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv1154101 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 12,079,545 | 12,079,545 | - |
nsv1154101 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000021.9 | Chr21 | 22,468,263 | 22,468,263 | - |
nsv1154101 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000019.9 | Chr19 | 12,190,360 | 12,190,360 | - | ||
nsv1154101 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000021.8 | Chr21 | 23,840,583 | 23,840,583 | - |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv4003380 | interchromosomal translocation | KWB1 | Sequencing | Read depth and paired-end mapping | 8,440 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|
nssv4003380 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 12,079,545 | 12,079,545 | - |
nssv4003380 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000021.9 | Chr21 | 22,468,263 | 22,468,263 | - |
nssv4003380 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 12,190,360 | 12,190,360 | - | ||
nssv4003380 | Submitted genomic | GRCh37 (hg19) | NC_000021.8 | Chr21 | 23,840,583 | 23,840,583 | - |