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dbVar

Database of genomic structural variation

nsv1154112

Organism: Homo sapiens

Study:nstd107 (John et al. 2014)
Variant Type:translocation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):John et al. 2014

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 220 SVs from 34 studies. See in: genome view

Remapped(Score: Perfect):142,222,337-142,222,337

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nsv1154112	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	142,222,337	142,222,337	not reported
nsv1154112	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	142,222,402	142,222,402	not reported
nsv1154112	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000008.10	Chr8	143,303,698	143,303,698	not reported
nsv1154112	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000008.10	Chr8	143,303,763	143,303,763	not reported

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv4003388	intrachromosomal translocation	KWB1	Sequencing	Read depth and paired-end mapping	8,440

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nssv4003388	Remapped	Perfect	GRCh38.p12	First Pass	NC_000008.11	Chr8	142,222,337	142,222,337	not reported
nssv4003388	Remapped	Perfect	GRCh38.p12	First Pass	NC_000008.11	Chr8	142,222,402	142,222,402	not reported
nssv4003388	Submitted genomic		GRCh37 (hg19)		NC_000008.10	Chr8	143,303,698	143,303,698	not reported
nssv4003388	Submitted genomic		GRCh37 (hg19)		NC_000008.10	Chr8	143,303,763	143,303,763	not reported

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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