nsv1159575
- Organism: Homo sapiens
- Study:nstd106 (Alsmadi et al. 2014)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Alsmadi et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 105 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 113 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 9 SVs from 6 studies. See in: genome view
Overlapping variant regions from other studies: 105 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 114 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv1159575 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 63,241,322 | 63,241,322 | - |
| nsv1159575 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 40,066,213 | 40,066,213 | - |
| nsv1159575 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_009646206.1 | Chr19|NW_0 09646206.1 | 341,356 | 341,356 | - |
| nsv1159575 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000014.8 | Chr14 | 63,708,040 | 63,708,040 | - | ||
| nsv1159575 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000019.9 | Chr19 | 40,572,120 | 40,572,120 | - |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv4023745 | interchromosomal translocation | KWS1 | Sequencing | Read depth and paired-end mapping | 22,470 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv4023745 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 63,241,322 | 63,241,322 | - |
| nssv4023745 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_009646206.1 | Chr19|NW_0 09646206.1 | 341,356 | 341,356 | - |
| nssv4023745 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 40,066,213 | 40,066,213 | - |
| nssv4023745 | Submitted genomic | GRCh37 (hg19) | NC_000014.8 | Chr14 | 63,708,040 | 63,708,040 | - | ||
| nssv4023745 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 40,572,120 | 40,572,120 | - |