nsv1159656
- Organism: Homo sapiens
- Study:nstd106 (Alsmadi et al. 2014)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Alsmadi et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 513 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 511 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 18 SVs from 14 studies. See in: genome view
Overlapping variant regions from other studies: 19 SVs from 15 studies. See in: genome view
Overlapping variant regions from other studies: 18 SVs from 14 studies. See in: genome view
Overlapping variant regions from other studies: 19 SVs from 15 studies. See in: genome view
Overlapping variant regions from other studies: 513 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 511 SVs from 37 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv1159656 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 79,038,712 | 79,038,712 | not reported |
nsv1159656 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 79,039,217 | 79,039,217 | not reported |
nsv1159656 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_2 | Second Pass | NT_187666.1 | Chr18|NT_1 87666.1 | 106,731 | 106,731 | not reported |
nsv1159656 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_2 | Second Pass | NT_187666.1 | Chr18|NT_1 87666.1 | 107,730 | 107,730 | not reported |
nsv1159656 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003315961.1 | Chr18|NW_0 03315961.1 | 109,262 | 109,262 | not reported |
nsv1159656 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003315961.1 | Chr18|NW_0 03315961.1 | 109,767 | 109,767 | not reported |
nsv1159656 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 76,798,712 | 76,798,712 | not reported | ||
nsv1159656 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 76,799,217 | 76,799,217 | not reported |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv4024665 | intrachromosomal translocation | KWS1 | Sequencing | Read depth and paired-end mapping | 22,470 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|
nssv4024665 | Remapped | Perfect | GRCh38.p12 | Second Pass | NT_187666.1 | Chr18|NT_1 87666.1 | 106,731 | 106,731 | not reported |
nssv4024665 | Remapped | Perfect | GRCh38.p12 | Second Pass | NT_187666.1 | Chr18|NT_1 87666.1 | 107,730 | 107,730 | not reported |
nssv4024665 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_003315961.1 | Chr18|NW_0 03315961.1 | 109,262 | 109,262 | not reported |
nssv4024665 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_003315961.1 | Chr18|NW_0 03315961.1 | 109,767 | 109,767 | not reported |
nssv4024665 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 79,038,712 | 79,038,712 | not reported |
nssv4024665 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 79,039,217 | 79,039,217 | not reported |
nssv4024665 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 76,798,712 | 76,798,712 | not reported | ||
nssv4024665 | Submitted genomic | GRCh37 (hg19) | NC_000018.9 | Chr18 | 76,799,217 | 76,799,217 | not reported |