nsv1159777
- Organism: Homo sapiens
- Study:nstd111 (Lou et al. 2015)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:31
- Validation:Not tested
- Clinical Assertions: No
- Region Size:22,800
- Publication(s):Lou et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 620 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 620 SVs from 74 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv1159777 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nsv1159777 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv4030198 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030199 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030200 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030201 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030202 | duplication | SNP array | Probe signal intensity | 3 |
| nssv4030203 | duplication | SNP array | Probe signal intensity | 3 |
| nssv4030204 | duplication | SNP array | Probe signal intensity | 3 |
| nssv4030205 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030206 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030207 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030208 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030209 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030210 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030211 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030212 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030213 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030214 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030215 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030216 | duplication | SNP array | Probe signal intensity | 3 |
| nssv4030217 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030218 | deletion | SNP array | Probe signal intensity | 0 |
| nssv4030219 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030220 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030221 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030222 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030223 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030224 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030225 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030226 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030227 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4030228 | deletion | SNP array | Probe signal intensity | 0 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv4030198 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030199 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030200 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030201 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030202 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030203 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030204 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030205 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030206 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030207 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030208 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030209 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030210 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030211 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030212 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030213 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030214 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030215 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030216 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030217 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030218 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030219 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030220 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030221 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030222 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030223 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030224 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030225 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030226 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030227 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030228 | Remapped | Perfect | NC_000010.11:g.(12 2574497_122582018) _(122591497_122597 296)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 122,574,497 | 122,582,018 | 122,591,497 | 122,597,296 |
| nssv4030198 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030199 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030200 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030201 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030202 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030203 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030204 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030205 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030206 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030207 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030208 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030209 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030210 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030211 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030212 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030213 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030214 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030215 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030216 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030217 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030218 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030219 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030220 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030221 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030222 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030223 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030224 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030225 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030226 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030227 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 | ||
| nssv4030228 | Submitted genomic | NC_000010.10:g.(12 4334013_124341534) _(124351013_124356 812)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 124,334,013 | 124,341,534 | 124,351,013 | 124,356,812 |