nsv1159843

Organism: Homo sapiens

Study:nstd111 (Lou et al. 2015)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:13
Validation:Not tested
Clinical Assertions: No
Region Size:29,836

Publication(s):Lou et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 889 SVs from 93 studies. See in: genome view

Remapped(Score: Perfect):18,919,323-18,949,158

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv1159843	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	18,919,323	18,927,525	18,940,816	18,949,158
nsv1159843	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	18,940,870	18,949,072	18,962,363	18,970,705

Variant Call Information

Variant Call ID	Type	Method	Analysis	Copy number
nssv4030480	deletion	SNP array	Probe signal intensity	1
nssv4030481	deletion	SNP array	Probe signal intensity	1
nssv4030482	duplication	SNP array	Probe signal intensity	4
nssv4030483	duplication	SNP array	Probe signal intensity	3
nssv4030484	duplication	SNP array	Probe signal intensity	3
nssv4030485	duplication	SNP array	Probe signal intensity	3
nssv4030486	duplication	SNP array	Probe signal intensity	3
nssv4030487	duplication	SNP array	Probe signal intensity	3
nssv4030488	duplication	SNP array	Probe signal intensity	3
nssv4030489	duplication	SNP array	Probe signal intensity	4
nssv4030490	duplication	SNP array	Probe signal intensity	3
nssv4030491	duplication	SNP array	Probe signal intensity	3
nssv4030492	duplication	SNP array	Probe signal intensity	3

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv4030480	Remapped	Perfect	NC_000011.10:g.(18 919323_18927525)_( 18940816_18949158) del	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,323	18,927,525	18,940,816	18,949,158
nssv4030481	Remapped	Perfect	NC_000011.10:g.(18 919323_18927525)_( 18940816_18949158) del	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,323	18,927,525	18,940,816	18,949,158
nssv4030482	Remapped	Perfect	NC_000011.10:g.(18 919323_18927525)_( 18940816_18949158) dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,323	18,927,525	18,940,816	18,949,158
nssv4030483	Remapped	Perfect	NC_000011.10:g.(18 919323_18927525)_( 18940816_18949158) dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,323	18,927,525	18,940,816	18,949,158
nssv4030484	Remapped	Perfect	NC_000011.10:g.(18 919323_18927525)_( 18940816_18949158) dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,323	18,927,525	18,940,816	18,949,158
nssv4030485	Remapped	Perfect	NC_000011.10:g.(18 919323_18927525)_( 18940816_18949158) dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,323	18,927,525	18,940,816	18,949,158
nssv4030486	Remapped	Perfect	NC_000011.10:g.(18 919323_18927525)_( 18940816_18949158) dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,323	18,927,525	18,940,816	18,949,158
nssv4030487	Remapped	Perfect	NC_000011.10:g.(18 919323_18927525)_( 18940816_18949158) dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,323	18,927,525	18,940,816	18,949,158
nssv4030488	Remapped	Perfect	NC_000011.10:g.(18 919323_18927525)_( 18940816_18949158) dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,323	18,927,525	18,940,816	18,949,158
nssv4030489	Remapped	Perfect	NC_000011.10:g.(18 919323_18927525)_( 18940816_18949158) dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,323	18,927,525	18,940,816	18,949,158
nssv4030490	Remapped	Perfect	NC_000011.10:g.(18 919323_18927525)_( 18940816_18949158) dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,323	18,927,525	18,940,816	18,949,158
nssv4030491	Remapped	Perfect	NC_000011.10:g.(18 919323_18927525)_( 18940816_18949158) dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,323	18,927,525	18,940,816	18,949,158
nssv4030492	Remapped	Perfect	NC_000011.10:g.(18 919323_18927525)_( 18940816_18949158) dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,323	18,927,525	18,940,816	18,949,158
nssv4030480	Submitted genomic		NC_000011.9:g.(189 40870_18949072)_(1 8962363_18970705)d el	GRCh37 (hg19)		NC_000011.9	Chr11	18,940,870	18,949,072	18,962,363	18,970,705
nssv4030481	Submitted genomic		NC_000011.9:g.(189 40870_18949072)_(1 8962363_18970705)d el	GRCh37 (hg19)		NC_000011.9	Chr11	18,940,870	18,949,072	18,962,363	18,970,705
nssv4030482	Submitted genomic		NC_000011.9:g.(189 40870_18949072)_(1 8962363_18970705)d up	GRCh37 (hg19)		NC_000011.9	Chr11	18,940,870	18,949,072	18,962,363	18,970,705
nssv4030483	Submitted genomic		NC_000011.9:g.(189 40870_18949072)_(1 8962363_18970705)d up	GRCh37 (hg19)		NC_000011.9	Chr11	18,940,870	18,949,072	18,962,363	18,970,705
nssv4030484	Submitted genomic		NC_000011.9:g.(189 40870_18949072)_(1 8962363_18970705)d up	GRCh37 (hg19)		NC_000011.9	Chr11	18,940,870	18,949,072	18,962,363	18,970,705
nssv4030485	Submitted genomic		NC_000011.9:g.(189 40870_18949072)_(1 8962363_18970705)d up	GRCh37 (hg19)		NC_000011.9	Chr11	18,940,870	18,949,072	18,962,363	18,970,705
nssv4030486	Submitted genomic		NC_000011.9:g.(189 40870_18949072)_(1 8962363_18970705)d up	GRCh37 (hg19)		NC_000011.9	Chr11	18,940,870	18,949,072	18,962,363	18,970,705
nssv4030487	Submitted genomic		NC_000011.9:g.(189 40870_18949072)_(1 8962363_18970705)d up	GRCh37 (hg19)		NC_000011.9	Chr11	18,940,870	18,949,072	18,962,363	18,970,705
nssv4030488	Submitted genomic		NC_000011.9:g.(189 40870_18949072)_(1 8962363_18970705)d up	GRCh37 (hg19)		NC_000011.9	Chr11	18,940,870	18,949,072	18,962,363	18,970,705
nssv4030489	Submitted genomic		NC_000011.9:g.(189 40870_18949072)_(1 8962363_18970705)d up	GRCh37 (hg19)		NC_000011.9	Chr11	18,940,870	18,949,072	18,962,363	18,970,705
nssv4030490	Submitted genomic		NC_000011.9:g.(189 40870_18949072)_(1 8962363_18970705)d up	GRCh37 (hg19)		NC_000011.9	Chr11	18,940,870	18,949,072	18,962,363	18,970,705
nssv4030491	Submitted genomic		NC_000011.9:g.(189 40870_18949072)_(1 8962363_18970705)d up	GRCh37 (hg19)		NC_000011.9	Chr11	18,940,870	18,949,072	18,962,363	18,970,705
nssv4030492	Submitted genomic		NC_000011.9:g.(189 40870_18949072)_(1 8962363_18970705)d up	GRCh37 (hg19)		NC_000011.9	Chr11	18,940,870	18,949,072	18,962,363	18,970,705

dbVar

Database of genomic structural variation

nsv1159843

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant