nsv1160081
- Organism: Homo sapiens
- Study:nstd111 (Lou et al. 2015)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:107,124
- Publication(s):Lou et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 395 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 401 SVs from 54 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv1160081 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 218,689,443 | 218,693,025 | 218,792,533 | 218,796,566 |
| nsv1160081 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 218,862,785 | 218,866,367 | 218,965,875 | 218,969,908 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv4026152 | deletion | SNP array | Probe signal intensity | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv4026152 | Remapped | Perfect | NC_000001.11:g.(21 8689443_218693025) _(218792533_218796 566)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 218,689,443 | 218,693,025 | 218,792,533 | 218,796,566 |
| nssv4026152 | Submitted genomic | NC_000001.10:g.(21 8862785_218866367) _(218965875_218969 908)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 218,862,785 | 218,866,367 | 218,965,875 | 218,969,908 |