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dbVar

Database of genomic structural variation

nsv1160225

Organism: Homo sapiens

Study:nstd111 (Lou et al. 2015)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:65,012

Publication(s):Lou et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 3834 SVs from 96 studies. See in: genome view

Remapped(Score: Perfect):20,376,311-20,441,322

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv1160225	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	20,376,311	20,380,735	20,422,239	20,441,322
nsv1160225	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	20,581,564	20,585,988	20,627,492	20,646,575

Variant Call Information

Variant Call ID	Type	Method	Analysis	Copy number
nssv4031912	deletion	SNP array	Probe signal intensity	1
nssv4031913	duplication	SNP array	Probe signal intensity	4
nssv4031914	deletion	SNP array	Probe signal intensity	1
nssv4031915	deletion	SNP array	Probe signal intensity	1
nssv4031916	duplication	SNP array	Probe signal intensity	4

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv4031912	Remapped	Perfect	NC_000015.10:g.(20 376311_20380735)_( 20422239_20441322) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,376,311	20,380,735	20,422,239	20,441,322
nssv4031913	Remapped	Perfect	NC_000015.10:g.(20 376311_20380735)_( 20422239_20441322) dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,376,311	20,380,735	20,422,239	20,441,322
nssv4031914	Remapped	Perfect	NC_000015.10:g.(20 376311_20380735)_( 20422239_20441322) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,376,311	20,380,735	20,422,239	20,441,322
nssv4031915	Remapped	Perfect	NC_000015.10:g.(20 376311_20380735)_( 20422239_20441322) del	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,376,311	20,380,735	20,422,239	20,441,322
nssv4031916	Remapped	Perfect	NC_000015.10:g.(20 376311_20380735)_( 20422239_20441322) dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,376,311	20,380,735	20,422,239	20,441,322
nssv4031912	Submitted genomic		NC_000015.9:g.(205 81564_20585988)_(2 0627492_20646575)d el	GRCh37 (hg19)		NC_000015.9	Chr15	20,581,564	20,585,988	20,627,492	20,646,575
nssv4031913	Submitted genomic		NC_000015.9:g.(205 81564_20585988)_(2 0627492_20646575)d up	GRCh37 (hg19)		NC_000015.9	Chr15	20,581,564	20,585,988	20,627,492	20,646,575
nssv4031914	Submitted genomic		NC_000015.9:g.(205 81564_20585988)_(2 0627492_20646575)d el	GRCh37 (hg19)		NC_000015.9	Chr15	20,581,564	20,585,988	20,627,492	20,646,575
nssv4031915	Submitted genomic		NC_000015.9:g.(205 81564_20585988)_(2 0627492_20646575)d el	GRCh37 (hg19)		NC_000015.9	Chr15	20,581,564	20,585,988	20,627,492	20,646,575
nssv4031916	Submitted genomic		NC_000015.9:g.(205 81564_20585988)_(2 0627492_20646575)d up	GRCh37 (hg19)		NC_000015.9	Chr15	20,581,564	20,585,988	20,627,492	20,646,575

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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