nsv1160297
- Organism: Homo sapiens
- Study:nstd111 (Lou et al. 2015)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:18
- Validation:Not tested
- Clinical Assertions: No
- Region Size:11,786
- Publication(s):Lou et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 205 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 205 SVs from 49 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv1160297 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nsv1160297 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv4032287 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4032288 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4032289 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4032290 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4032291 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4032292 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4032293 | deletion | SNP array | Probe signal intensity | 0 |
| nssv4032294 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4032295 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4032296 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4032297 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4032298 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4032299 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4032300 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4032301 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4032302 | deletion | SNP array | Probe signal intensity | 1 |
| nssv4032303 | deletion | SNP array | Probe signal intensity | 0 |
| nssv4032304 | duplication | SNP array | Probe signal intensity | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv4032287 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032288 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032289 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032290 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032291 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032292 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032293 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032294 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032295 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032296 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032297 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032298 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032299 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032300 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032301 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032302 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032303 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032304 | Remapped | Perfect | NC_000015.10:g.(47 914023_47916046)_( 47922506_47925808) dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,914,023 | 47,916,046 | 47,922,506 | 47,925,808 |
| nssv4032287 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032288 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032289 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032290 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032291 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032292 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032293 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032294 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032295 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032296 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032297 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032298 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032299 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032300 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032301 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032302 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032303 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d el | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 | ||
| nssv4032304 | Submitted genomic | NC_000015.9:g.(482 06220_48208243)_(4 8214703_48218005)d up | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,206,220 | 48,208,243 | 48,214,703 | 48,218,005 |