nsv1160934
- Organism: Homo sapiens
- Study:nstd111 (Lou et al. 2015)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:135,670
- Publication(s):Lou et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 496 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 497 SVs from 65 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv1160934 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 41,608,848 | 41,608,848 | 41,744,517 | 41,744,517 |
nsv1160934 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 41,650,339 | 41,654,151 | 41,783,079 | 41,786,009 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Copy number |
---|---|---|---|---|
nssv4027698 | deletion | SNP array | Probe signal intensity | 1 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv4027698 | Remapped | Good | NC_000003.12:g.(41 608848_41608848)_( 41744517_41744517) del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 41,608,848 | 41,608,848 | 41,744,517 | 41,744,517 |
nssv4027698 | Submitted genomic | NC_000003.11:g.(41 650339_41654151)_( 41783079_41786009) del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 41,650,339 | 41,654,151 | 41,783,079 | 41,786,009 |