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dbVar

Database of genomic structural variation

nsv1161063

Organism: Homo sapiens

Study:nstd111 (Lou et al. 2015)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:15,048

Publication(s):Lou et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 347 SVs from 71 studies. See in: genome view

Remapped(Score: Perfect):21,367,070-21,382,117

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv1161063	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	21,367,070	21,370,380	21,375,228	21,382,117
nsv1161063	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	21,368,693	21,372,003	21,376,851	21,383,740

Variant Call Information

Variant Call ID	Type	Method	Analysis	Copy number
nssv4028760	deletion	SNP array	Probe signal intensity	1
nssv4028761	deletion	SNP array	Probe signal intensity	1
nssv4028762	deletion	SNP array	Probe signal intensity	1
nssv4028763	duplication	SNP array	Probe signal intensity	4
nssv4028764	duplication	SNP array	Probe signal intensity	4
nssv4028765	duplication	SNP array	Probe signal intensity	3
nssv4028766	deletion	SNP array	Probe signal intensity	1

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv4028760	Remapped	Perfect	NC_000004.12:g.(21 367070_21370380)_( 21375228_21382117) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	21,367,070	21,370,380	21,375,228	21,382,117
nssv4028761	Remapped	Perfect	NC_000004.12:g.(21 367070_21370380)_( 21375228_21382117) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	21,367,070	21,370,380	21,375,228	21,382,117
nssv4028762	Remapped	Perfect	NC_000004.12:g.(21 367070_21370380)_( 21375228_21382117) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	21,367,070	21,370,380	21,375,228	21,382,117
nssv4028763	Remapped	Perfect	NC_000004.12:g.(21 367070_21370380)_( 21375228_21382117) dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	21,367,070	21,370,380	21,375,228	21,382,117
nssv4028764	Remapped	Perfect	NC_000004.12:g.(21 367070_21370380)_( 21375228_21382117) dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	21,367,070	21,370,380	21,375,228	21,382,117
nssv4028765	Remapped	Perfect	NC_000004.12:g.(21 367070_21370380)_( 21375228_21382117) dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	21,367,070	21,370,380	21,375,228	21,382,117
nssv4028766	Remapped	Perfect	NC_000004.12:g.(21 367070_21370380)_( 21375228_21382117) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	21,367,070	21,370,380	21,375,228	21,382,117
nssv4028760	Submitted genomic		NC_000004.11:g.(21 368693_21372003)_( 21376851_21383740) del	GRCh37 (hg19)		NC_000004.11	Chr4	21,368,693	21,372,003	21,376,851	21,383,740
nssv4028761	Submitted genomic		NC_000004.11:g.(21 368693_21372003)_( 21376851_21383740) del	GRCh37 (hg19)		NC_000004.11	Chr4	21,368,693	21,372,003	21,376,851	21,383,740
nssv4028762	Submitted genomic		NC_000004.11:g.(21 368693_21372003)_( 21376851_21383740) del	GRCh37 (hg19)		NC_000004.11	Chr4	21,368,693	21,372,003	21,376,851	21,383,740
nssv4028763	Submitted genomic		NC_000004.11:g.(21 368693_21372003)_( 21376851_21383740) dup	GRCh37 (hg19)		NC_000004.11	Chr4	21,368,693	21,372,003	21,376,851	21,383,740
nssv4028764	Submitted genomic		NC_000004.11:g.(21 368693_21372003)_( 21376851_21383740) dup	GRCh37 (hg19)		NC_000004.11	Chr4	21,368,693	21,372,003	21,376,851	21,383,740
nssv4028765	Submitted genomic		NC_000004.11:g.(21 368693_21372003)_( 21376851_21383740) dup	GRCh37 (hg19)		NC_000004.11	Chr4	21,368,693	21,372,003	21,376,851	21,383,740
nssv4028766	Submitted genomic		NC_000004.11:g.(21 368693_21372003)_( 21376851_21383740) del	GRCh37 (hg19)		NC_000004.11	Chr4	21,368,693	21,372,003	21,376,851	21,383,740

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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