nsv1161839
- Organism: Homo sapiens
- Study:nstd111 (Lou et al. 2015)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:143,404
- Publication(s):Lou et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2580 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 2584 SVs from 95 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv1161839 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 12,010,394 | 12,013,904 | 12,148,728 | 12,153,797 |
| nsv1161839 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 12,010,394 | 12,013,904 | 12,148,728 | 12,153,797 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv4037354 | deletion | SNP array | Probe signal intensity | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv4037354 | Remapped | Perfect | NC_000009.12:g.(12 010394_12013904)_( 12148728_12153797) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 12,010,394 | 12,013,904 | 12,148,728 | 12,153,797 |
| nssv4037354 | Submitted genomic | NC_000009.11:g.(12 010394_12013904)_( 12148728_12153797) del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 12,010,394 | 12,013,904 | 12,148,728 | 12,153,797 |