nsv1161854
- Organism: Homo sapiens
- Study:nstd111 (Lou et al. 2015)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:188,628
- Publication(s):Lou et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1078 SVs from 89 studies. See in: genome view
Overlapping variant regions from other studies: 1084 SVs from 90 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv1161854 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 30,340,967 | 30,342,074 | 30,524,027 | 30,529,594 |
| nsv1161854 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 30,340,965 | 30,342,072 | 30,524,025 | 30,529,592 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv4037523 | deletion | SNP array | Probe signal intensity | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv4037523 | Remapped | Perfect | NC_000009.12:g.(30 340967_30342074)_( 30524027_30529594) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 30,340,967 | 30,342,074 | 30,524,027 | 30,529,594 |
| nssv4037523 | Submitted genomic | NC_000009.11:g.(30 340965_30342072)_( 30524025_30529592) del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 30,340,965 | 30,342,072 | 30,524,025 | 30,529,592 |