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dbVar

Database of genomic structural variation

nsv1163556

Organism: Homo sapiens

Study:nstd109 (Wildschutte et al. 2015)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Wildschutte et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 29 SVs from 11 studies. See in: genome view

Remapped(Score: Perfect):18,196,866-18,197,016

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv1163556	Remapped	Perfect	GRCh38.p12	Primary Assembly	Second Pass	NC_000013.11	Chr13	18,196,941 (-75, +75)	18,196,941 (-75, +75)
nsv1163556	Remapped	Perfect	GRCh38.p12	PATCHES	First Pass	NW_011332699.1	Chr13\|NW_0 11332699.1	195,601 (-75, +75)	195,601 (-75, +75)
nsv1163556	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NT_113923.1	Unplaced\|N T_113923.1	25,693 (-75, +75)	25,693 (-75, +75)

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv4042644	alu insertion	Sequencing	de novo and local sequence assembly

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv4042644	Remapped	Perfect	NW_011332699.1:g.( 195526_195676)_(19 5526_195676)ins359	GRCh38.p12	First Pass	NW_011332699.1	Chr13\|NW_0 11332699.1	195,601 (-75, +75)	195,601 (-75, +75)
nssv4042644	Remapped	Perfect	NC_000013.11:g.(18 196866_18197016)_( 18196866_18197016) ins359	GRCh38.p12	Second Pass	NC_000013.11	Chr13	18,196,941 (-75, +75)	18,196,941 (-75, +75)
nssv4042644	Submitted genomic		NT_113923.1:g.(256 18_25768)_(25618_2 5768)ins359	GRCh37 (hg19)		NT_113923.1	Unplaced\|N T_113923.1	25,693 (-75, +75)	25,693 (-75, +75)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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