nsv1188025
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:556,636
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1669 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 1670 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 529 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1188025 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 55,710,592 | 56,267,227 |
| nsv1188025 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 57,470,352 | 58,026,988 |
| nsv1188025 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 57,140,358 | 57,696,994 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis |
|---|---|---|---|---|
| nssv7461875 | copy number loss | 37699 | Oligo aCGH | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7461875 | Remapped | Perfect | NC_000010.11:g.(?_ 55710592)_(5626722 7_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 55,710,592 | 56,267,227 |
| nssv7461875 | Remapped | Perfect | NC_000010.10:g.(?_ 57470352)_(5802698 8_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 57,470,352 | 58,026,988 |
| nssv7461875 | Submitted genomic | NC_000010.9:g.(?_5 7140358)_(57696994 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 57,140,358 | 57,696,994 |