nsv1188920
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:372,634
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1038 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 1038 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 289 SVs from 21 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv1188920 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 45,500,233 | 45,872,866 |
nsv1188920 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 45,500,335 | 45,872,968 |
nsv1188920 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 45,536,092 | 45,908,725 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv7460320 | copy number gain | 11043 | Oligo aCGH | Probe signal intensity | nssv7460726 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv7460320 | Remapped | Perfect | NC_000005.10:g.(?_ 45500233)_(4587286 6_?)dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 45,500,233 | 45,872,866 |
nssv7460320 | Remapped | Perfect | NC_000005.9:g.(?_4 5500335)_(45872968 _?)dup | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 45,500,335 | 45,872,968 |
nssv7460320 | Submitted genomic | NC_000005.8:g.(?_4 5536092)_(45908725 _?)dup | NCBI36 (hg18) | NC_000005.8 | Chr5 | 45,536,092 | 45,908,725 |